Oral(Poster) presentation

    • Ying Chen, Tomoya Mori, Tsuyoshi Kato, Junko Yamane, Yoshikatsu Nakano, Hiroyuki Fujimura, Shoichiro Suda, Toru Maruyama, Michihiro Ito, Haruko Takeyama and Wataru Fujibuchi

      Forecasting coral reef system through multiple-kernel support vector regression.(Poster)
      IIBMP 2017,
      September, Sapporo.
      2017.9.27-29

    • Hiroki Takahashi, Junko Yamane, and Wataru Fujibuchi

      Multiple kernel support vector machine can generate weights of feature matrices for toxicity prediction.
      SIGBIO,
      September, Sapporo.
      2017.9.26

    • Yuji Kozakura, Tomoya Mori, and Wataru Fujibuchi

      Comparison of clustering methods for single-cell transcriptome analysis.
      SIGBIO,
      September, Sapporo.
      2017.9.26

    • Nobuko Taniyama, Kenta Kobayashi, Junko Yamane, Tomoya Mori, Jun K Yamashita and Wataru Fujibuchi

      Epigenetic analysis of cellular individual differences by single-cell methylome analysis
      The 89th Annual Meeting of the Genetics Society of Japan,
      September, Okayama.
      2017.9.13-16

    • Anna Elizabeth Sappington and Wataru Fujibuchi

      Improving models of cell type domains with machine learning and scRNA-Seq.(Poster) BEST PRESENTATION AWARD
      AMGEN SCHOLARS JAPAN SYMPOSIUM 2017,
      August, Tokyo.
      2017.8.9-10

    • Junko Yamane, Tomoya Mori, Nobuko Taniyama, Kenta Kobayashi, and Wataru Fujibuchi

      Development of new enhanced single-cell RRBS protocol toward in-silico 3D tissue reconstruction.(Poster)
      RIKEN Single Cell Science Symposium,
      July, Yokohama.
      2017.7.6-7

    • Tomoya Mori and Wataru Fujibuchi

      Development of ab initio 3D Reconstruction Algorithm for Mid-gastrula Mouse Embryo from Transcriptome Using Kernel Self-organizing Map.(Oral and Poster)
      RIKEN Single Cell Science Symposium,
      July, Yokohama.
      2017.7.6-7

    • Yuji Kozakura and Wataru Fujibuchi

      Profiing of endogenous retrovirus-derived long non-coding RNAs in brain tissue.(Poster)
      RIKEN Single Cell Science Symposium,
      July, Yokohama.
      2017.7.6-7

    • Midori Yuji, Kunie Sakurai, Tomoya Mori, Junko Yamane, Nobuko Taniyama, Kenta Kobayashi, Koji Yamanegi and Wataru Fujibuchi

      Clear classification of human cells and establishment of cell identification system.(Poster)
      RIKEN Single Cell Science Symposium,
      July, Yokohama.
      2017.7.6-7

    • Hiroki Takahashi and Wataru Fujibuchi

      Identifying subtypes of tissue stem cells with single-cell analysis.(Poster)
      RIKEN Single Cell Science Symposium,
      July, Yokohama.
      2017.7.6-7

    • Junko Yamane, Tomoya Mori, Nobuko Taniyama, Kenta Kobayashi, Yoshiko Okamura, Wataru Fujibuchi

      Development of enhanced single-cell RRBS method toward 3D tissue reconstruction.(Poster)
      The 12th International Workshop on Advanced Genomics,
      June, Tokyo.
      2017.6.27-29

    • Tomoya Mori and Wataru Fujibuchi

      Development of 3D Reconstruction Method for Mid-gastrula Mouse Embryo from Transcriptome Using Self-organizing Map.(Poster)
      The 12th International Workshop on Advanced Genomics,
      June, Tokyo.
      2017.6.27-29

    • Kunie Sakurai and Wataru Fujibuchi

      Developing global cellular information retrieval system with minimum reporting guidelines on cellular data for regenerative medicine.(Poster)
      2ND CHALLENGES IN COMPUTATIONAL BIOLOGY: GENE EXPRESSION DATA ANALYSIS,
      December, Mainz.
      2016.12.1-2

    • Junko Yamane, Tomoya Mori, Nobuko Taniyama, Kenta Kobayashi, Wataru Fujibuchi

      Development of Enhanced Reduced Representation Bisulfite Sequencing Method for Single-cell Methylome Analysis.
      2ND CHALLENGES IN COMPUTATIONAL BIOLOGY: GENE EXPRESSION DATA ANALYSIS,
      December, Mainz.
      2016.12.1-2

    • Tomoya Mori, Junko Yamane, Kenta Kobayashi, Nobuko Taniyama, Takanori Tano, Wataru Fujibuchi

      Development of 3D Tissue Reconstruction Method from Single- cell RNA-seq Data.
      2ND CHALLENGES IN COMPUTATIONAL BIOLOGY: GENE EXPRESSION DATA ANALYSIS,
      December, Mainz.
      2016.12.1-2

    • Tomoya Mori, Junko Yamane, Nobuko Taniyama, Kenta Kobayashi and Wataru Fujibuchi

      DEVELOPMENT OF 3D-RECONSTRUCTION METHOD FOR MOUSE BLASTOCYST FROM SINGLE-CELL TRANSCRIPTOME DATA.(Poster)
      International Conference on Single Cell Research 2016,
      November, Tokyo.
      2016.11.16-17

    • Nobuko Taniyama, Kenta Kobayashi, Junko Yamane, Tomoya Mori, Jun K Yamashita and Wataru Fujibuchi.

      Single-cell methylome analysis of mouse blastocyst.
      The 88th Annual Meeting of the Genetics Society of Japan,
      September, Mishima.
      2016.9.7-9

    • Kunie Sakurai, Andreas Kurtz, Glyn Stacy, Michel Sheldon, and Wataru Fujibuchi

      International collaboration for developing the standardized reporting guideline on cellular assays and global cellular data retrieval system for regenerative medicine.(Poster)
      ISSCR2016 Annual Meeting,
      June, San Francisco.
      2016.6.22-25

    • Kunie Sakurai, Midori Yuji, Junko Yamane, Kenta Kobayashi, Nobuko Taniyama, Takeaki Taniguchi, Koji Yamanegi, and Wataru Fujibuchi

      SHOGoiN Database: a database to integrate standardized data and diverse knowledge of cells.(Poster)
      Systems Biology: Global Regulation of Gene Expression,
      Cold Spring Harbor Laboratory, March, New York.
      2016.3.15-19

    • Yuki Kato and Wataru Fujibuchi

      A computational method for dissecting single-cell populations based on transcriptomic data.(Poster)
      CiRA/ISSCR 2016 INTERNATIONAL SYMPOSIUM,
      March, Kyoto.
      2016.3.22-24

    • Junko Yamane, Kenta Kobayashi, Nobuko Taniyama, Tomoya Mori and Wataru Fujibuchi

      Developing enhanced-scRRBS method towards in-silico 3D reconstruction of mouse and human tissues.(Poster)
      CiRA/ISSCR 2016 INTERNATIONAL SYMPOSIUM,
      March, Kyoto.
      2016.3.22-24

    • Kunie Sakurai, Andreas Kurtz, Glyn Stacy, Michel Sheldon, and Wataru Fujibuchi

      International collaboration for developing the standardized reporting guideline on cellular assays for regenerative medicine.(Poster)
      CiRA/ISSCR 2016 INTERNATIONAL SYMPOSIUM,
      March, Kyoto.
      2016.3.22-24

    • Tomoya Mori, Kunie Sakurai and Wataru Fujibuchi

      A Cell Type Classification Method Based on Tissue Transcriptome Data and its Application to Germ Layers.(Poster)
      CiRA/ISSCR 2016 INTERNATIONAL SYMPOSIUM,
      March, Kyoto.
      2016.3.22-24

    • Midori Yuji, Kunie Sakurai, Takeaki Taniguchi and Wataru Fujibuchi

      Developing an integrated database system for classifying human cells with a defined taxonomy and model animal cells.(Poster)
      CiRA/ISSCR 2016 INTERNATIONAL SYMPOSIUM,
      March, Kyoto.
      2016.3.22-24

    • Kunie Sakurai and Wataru Fujibuchi

      Minimum Information Guideline for Regenerative Medicine and Genome Privacy.(Oral and Poster) RESEARCH AWARD
      IIBMP2015(JSBi2015),
      October, Kyoto.
      2015.10.29-31

    • Kenta Kobayashi, Midori Yuji, Yuki Kato, Takeaki Taniguchi, Toru Maruyama, Michihiro Ito, Susumu Goto, Haruko Takeyama and Wataru Fujibuchi.

      Development of a pipeline for analysis of meta- and single-cell genomic sequences.(Poster)
      IIBMP2015(JSBi2015),
      October, Kyoto.
      2015.10.29-31

    • Takamasa Okanishi, Yuki Kato, Hiroyuki Fujimura, Yoshikatsu Nakano, Shoichiro Suda, Hideko Sone and Wataru Fujibuchi.

      Network analysis of marine environmental factors based on MCMC sampling.(Poster)
      IIBMP2015(JSBi2015),
      October, Kyoto.
      2015.10.29-31

    • Hideko Sone and Wataru Fujibuchi

      Toxicity prediction by using gene expression profiling data.
      The 43rd Symposium on Structural Activity Relationship 2015 & The 10th Japan-China Joint Symposium on Drug Discovery and Development,
      September, Niigata.
      2015.9.27-29

    • Nobuko Taniyama, Kenta Kobayashi, Junko Yamane, Jun Yamashita and Wataru Fujibuchi.

      Single cell transcriptome analysis of whole mouse blastocyst.
      The 86th Annual Meeting of the Zoological Society of Japan,
      September, Niigata.
      2015.9.17-19

    • Kunie Sakurai and Wataru Fujibuchi

      Minimum Information Guideline for Regenerative Medicine and Genome Privacy.(Poster)
      PRIVAGEN 2015,
      September,Tokyo.
      2015.9.8

    • Junko Yamane, Kenta Kobayashi, Nobuko Taniyama and Wataru Fujibuchi.

      Enhanced-scRRBS for Massive Single Cell Methylome Analysis Towards in silico 3D-Reconstructions of Mouse and Human Tissues.
      Pacifichem 2015,
      December, Hawaii.
      2015.12.15-20

    • Junko Yamane, Kenta Kobayashi, Yuki Kato and Wataru Fujibuchi.

      Towards in silico 3D-reconstruction of tissues based on massive single cell transcriptome and methylome techniques
      The 11th International Workshop on Advanced Genomics,
      May, Tokyo.
      2015.5.20-22

    • Junko Yamane, Sachiyo Aburatani, Satoshi Imanishi, Hiromi Akanuma, Reiko Nagano, Tsuyoshi Kato, Hideko Sone, Seiichiroh Ohsako and Wataru Fujibuchi.

      Prediction of Developmental Chemical Toxicity by Support Vector Machines with Gene Networks in Human Embryonic Stem Cell Validation System
      The 18th Takeda Science Foundation Symposium on Biocience,
      January, Osaka.
      2015.1.15-17

    • Kunie Sakurai, Junko Yamane, Kenta Kobayashi, Koji Yamanegi, Takeaki Taniguchi, Yuki Kato and Wataru Fujibuchi.

      SHOGoiN Cell Database: a framework for a new repository on single cell assay data and diverse knowledge of human cells.
      The 18th Takeda Science Foundation Symposium on Biocience,
      January, Osaka.
      2015.1.15-17

    • Junko Yamane, Toru Maruyama, Michihiro Ito, Haruko Takeyama and Wataru Fujibuchi.

      Kernel CCA for Microbial Meta-transcriptome Data to Investigate Coral Survivability in Ryukyu Sea.
      GIW/ISCB-Asia 2014,
      December, Tokyo.
      2014.12.15-17

    • Kunie Sakurai, Junko Yamane, Kenta Kobayashi, Koji Yamanegi, Takeaki Taniguchi, Yuki Kato and Wataru Fujibuchi.

      Stem Cell Informatics Database: a framework for a new repository on single cell assay data and diverse knowledge of human cells.
      GIW/ISCB-Asia 2014,
      December, Tokyo.
      2014.12.15-17

    • Takeaki Taniguchi, Yuki Kato, Susumu Goto and Wataru Fujibuchi.

      Development of a pipeline for analysis of meta- and single cell genomic sequences.
      GIW/ISCB-Asia 2014,
      December, Tokyo.
      2014.12.15-17

    • Junko Yamane, Toru Maruyama, Kenta Kobayashi and Wataru Fujibuchi.

      Standardization of Pluripotent Stem Cells and Differentiated Cells using Single-cell Analysis
      The 12th Annual Meeting of International Society for Stem Cell research,,
      June, Vancouver.
      2014.06.18-21

    • Wataru Fujibuchi.

      SHOGoiN- Human omics database for the generation of iPS and normal cells.
      Systems Biology: Global Regulation of Gene Expression,
      Cold Spring Harbor Laboratory, March, New York.
      2014.03.18-22

    • Junko Yamane, Michihiro Tanaka and Wataru Fujibuchi.

      Standardization of human iPS and ES cells using single-cell transcriptome analysis.
      Systems Biology: Global Regulation of Gene Expression,
      Cold Spring Harbor Laboratory, March, New York.
      2014.03.18-22

    • Michihiro Tanaka, Junko Yamane, Kenichi Tanaka, Kenta Kobayashi and Wataru Fujibuchi.

      Bioinformatics resources for cell standardization at single-cell resolution.
      The 7th Takeda Science Foundation Symposium on PharmaSciences,
      Center for Learning and Innovation (CLI) Takeda Pharmaceutical Company Ltd., January, Osaka.
      2014.01.15-18

    • Junko Yamane, Sachiyo Aburatani, Satoshi Imanishi, Reiko Nagano, Hideko Sone, Seiichiroh Ohsako and Wataru Fujibuchi.

      rediction of Developmental Neurotixic Effects using Human Pluripotent Stem Cells.
      The 7th Takeda Science Foundation Symposium on PharmaSciences,
      Center for Learning and Innovation (CLI) Takeda Pharmaceutical Company Ltd., January, Osaka.
      2014.01.15-18

    • Junko Yamane, Michihiro Tanaka and Wataru Fujibuchi.

      Single-cell RNA-seq analysis of human iPS and ES cells.
      Bioinformatics week in Odaiba 2013 (BiWO 2013),
      AIST, September, Tokyo.
      2013.9.9-13

    • Michihiro Tanaka, Junko Yamane and Wataru Fujibuchi.

      TRANSCRIPTOMIC LANDSCAPE OF HUMAN iPS CELLS AT SINGLE-CELL RESOLUTION.
      CiRA International Symposium 2013, Raising the Next Generation of Stem Cell Research,
      Kyoto University Clock Tower Hall, March, Kyoto.
      2013.3.11-12

    • Junko Yamane, Michihiro Tanaka and Wataru Fujibuchi.

      Standardization of human iPS cells with single cell technology.
      International Joint Symposium on Single-Cell Analysis,
      Kyoto Research Park, November, Kyoto.
      2012.11.27-28